…premises (holocaust): a blank period of time including a cardrive, a visit to a house of mourning, a leavetaking (wilderness): the eroticism produced by feminine exhibitionism (rite of Onan): the prolonged delivery of Mrs Mina Purefoy (heave offering): the visit to the disorderly house of Mrs Bella Cohen, 82 Tyrone street, lower and subsequent brawl and chance medley in Beaver street (Armageddon)—nocturnal perambulation to and from the cabman’s shelter, Butt Bridge (atonement).
There are no more uses of "atone" in the book.
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To atone for sins is a common religious theme.
Approved forms of faith, practice, and conduct were laid down as consistent with orthodoxy, and deviation from these standards had to be confessed and atoned for by a prescribed form of penance.
Dictionary of the History of Ideas -- http://etext.lib.virginia.edu/cgi-local/DHI/dhi.cgi?id=dv1-50(retrieved 05/20/06)